PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g04730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 369aa    MW: 40553.2 Da    PI: 5.7036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g04730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-12181223754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Vradi04g04730.1 181 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 223
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17177247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9180223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15181236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-13181227No hitNo description
CDDcd048731.24E-6296337No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MMEGYSLPPP PGEEDAPPPS WGRPNSQEED IAIALGAPLS FKSMLQQQPQ QPQLQPQPPQ  60
LDSYFNFNIN SAIPIPFVPP MESFPPLDPF SPSLSSSPFF NNTNNTSMPF DPGFDLGLDN  120
GLHSSCPPLF SQVQPGFEFG ELEALTAAPG HNDNGNNGLK RSENAEDHKG KRKGLPAKNL  180
MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIDYL KELLQRINDL HNELETTPVG  240
SSLPPSTSTS FQPLTPTLPT LPCRVKEELY PGTLPSPKNQ AAKVEVRARE GRAVNIHMFC  300
TRRPGLLLST MKALDNLGLD VQQAVISCFN GFALDVFKAE QQCREGQDVL PEQIKAVLLD  360
SAGFHGMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170188KRKGLPAKNLMAERRRRKK
2182189ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498307.10.0PREDICTED: transcription factor ICE1-like isoform X1
SwissprotQ9LSE21e-109ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S3RVV50.0A0A0S3RVV5_PHAAN; Uncharacterized protein
STRINGGLYMA16G05390.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-94bHLH family protein